Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 4552
Gene Symbol: MTRR
MTRR
0.100 AlteredExpression group BEFREE A much-reduced expression of MTHFR (p < 0.01) and an abnormally high expression of methionine synthase reductase (p < 0.001) were observed in the NTD group. 30941645 2019
Entrez Id: 4548
Gene Symbol: MTR
MTR
0.100 AlteredExpression group BEFREE Vitamin B-12 and liver activity and expression of methionine synthase are decreased in fetuses with neural tube defects. 30848279 2019
Entrez Id: 54858
Gene Symbol: PGPEP1
PGPEP1
0.100 GeneticVariation group BEFREE In vertebrate embryos undergoing convergent extension (CE), the Planar Cell Polarity (PCP) pathway drives the elongation of the body axis and shapes the central nervous system, and mutations of the PCP genes predispose humans to various malformations including neural tube defects. 30579764 2019
Entrez Id: 25902
Gene Symbol: MTHFD1L
MTHFD1L
0.080 GeneticVariation group BEFREE Deletion of Mthfd1l causes embryonic lethality, developmental delay, and neural tube defects in mice. 31518072 2019
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.080 Biomarker group BEFREE Female mice lacking the tumor suppressor p53 display NTDs with incomplete penetrance. 30970248 2019
Entrez Id: 6948
Gene Symbol: TCN2
TCN2
0.050 Biomarker group BEFREE We replicated the association of TCN2, BHMT and GLI3 with NTD risk in the 81 cases. 31139930 2019
Entrez Id: 841
Gene Symbol: CASP8
CASP8
0.040 GeneticVariation group BEFREE In the animal study, increased NTD rates (13.5% frequency), Casp8 hypomethylation, caspase-8 upregulation, increased caspase-8 cleavage, and excessive apoptosis were found in mouse embryos cultured with benz(a)pyrene (BaP) in vitro. 31064411 2019
Entrez Id: 6658
Gene Symbol: SOX3
SOX3
0.030 Biomarker group BEFREE Our data demonstrate that SOX3 duplication is a genomic imbalance involved in the pathogenesis of NTDs. 31299102 2019
Entrez Id: 6658
Gene Symbol: SOX3
SOX3
0.030 Biomarker group BEFREE Xq27.1 duplication encompassing SOX3 has been implicated in the aetiology of X-linked hypopituitarism associated with intellectual disability and neural tube defects. 31678974 2019
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
0.020 Biomarker group BEFREE Taken together, our findings highlight the effect of FA on FGF pathways during neurogenesis, and the mechanism may be due to the low expression of Brachyury gene via hypermethylation under FA-insufficient conditions.-Chang, S., Lu, X., Wang, S., Wang, Z., Huo, J., Huang, J., Shangguan, S., Li, S., Zou, J., Bao, Y., Guo, J., Wang, F., Niu, B., Zhang, T., Qiu, Z., Wu, J., Wang, L. The effect of folic acid deficiency on FGF pathway via Brachyury regulation in neural tube defects. 30592646 2019
Entrez Id: 4255
Gene Symbol: MGMT
MGMT
0.020 Biomarker group BEFREE This study investigated MGMT mRNA expression and methylation levels in the early embryo and in different embryonic stages, as well as the relationship between MGMT and neural tube defects. 30531021 2019
Entrez Id: 2309
Gene Symbol: FOXO3
FOXO3
0.020 AlteredExpression group BEFREE Embryos were harvested at embryonic day 8.5 to determine FoxO3a and autophagy activity and at embryonic day 10.5 for the presence of neural tube defects. 30312583 2019
Entrez Id: 79727
Gene Symbol: LIN28A
LIN28A
0.010 Biomarker group BEFREE Using ribosomal protein 24 hypomorphic mice (<i>Rpl24<sup>Bst/+</sup></i> ) as a genetic tool to dampen global protein synthesis, we found that <i>Lin28a<sup>-/-</sup>;Rpl24<sup>Bst/+</sup></i> compound mutants exhibited NTDs resembling those seen in <i>Lin28a/b</i> dKO mice. 31064784 2019
Entrez Id: 429
Gene Symbol: ASCL1
ASCL1
0.010 AlteredExpression group BEFREE We also report that p53S decreased expression of UTX at mRNA and protein level via increasing Xist transcript, result in high female-specific H3K27me3 expression and repressed Mash1 transcription, which facilitating abnormal proliferation, differentiation, and apoptosis, result in the mis-regulation of neurodevelopment and neural tube defects (NTDs). 31523200 2019
Entrez Id: 7403
Gene Symbol: KDM6A
KDM6A
0.010 AlteredExpression group BEFREE We also report that p53S decreased expression of UTX at mRNA and protein level via increasing Xist transcript, result in high female-specific H3K27me3 expression and repressed Mash1 transcription, which facilitating abnormal proliferation, differentiation, and apoptosis, result in the mis-regulation of neurodevelopment and neural tube defects (NTDs). 31523200 2019
Entrez Id: 8359
Gene Symbol: H4C1
H4C1
0.010 Biomarker group BEFREE Finally, we used LC-ESI-MS and WB to compare whether histone H4 acetylation was different in NTDs. 31612645 2019
Entrez Id: 89122
Gene Symbol: TRIM4
TRIM4
0.010 GeneticVariation group BEFREE A rare missense variant (rs76665876) in TRIM4 was found in 3 of the 14 NTD cases but was not related to TRIM4 expression. 30709423 2019
Entrez Id: 8370
Gene Symbol: H4C14
H4C14
0.010 Biomarker group BEFREE Finally, we used LC-ESI-MS and WB to compare whether histone H4 acetylation was different in NTDs. 31612645 2019
Entrez Id: 8367
Gene Symbol: H4C5
H4C5
0.010 Biomarker group BEFREE Finally, we used LC-ESI-MS and WB to compare whether histone H4 acetylation was different in NTDs. 31612645 2019
Entrez Id: 3688
Gene Symbol: ITGB1
ITGB1
0.010 Biomarker group BEFREE We identified four novel loss-of-function variants in three genes, MTHFR, DLC1, and ITGB1, previously associated with NTD. 30415495 2019
Entrez Id: 121504
Gene Symbol: H4-16
H4-16
0.010 Biomarker group BEFREE Finally, we used LC-ESI-MS and WB to compare whether histone H4 acetylation was different in NTDs. 31612645 2019
Entrez Id: 8365
Gene Symbol: H4C8
H4C8
0.010 Biomarker group BEFREE Finally, we used LC-ESI-MS and WB to compare whether histone H4 acetylation was different in NTDs. 31612645 2019
Entrez Id: 8363
Gene Symbol: H4C11
H4C11
0.010 Biomarker group BEFREE Finally, we used LC-ESI-MS and WB to compare whether histone H4 acetylation was different in NTDs. 31612645 2019
Entrez Id: 8362
Gene Symbol: H4C12
H4C12
0.010 Biomarker group BEFREE Finally, we used LC-ESI-MS and WB to compare whether histone H4 acetylation was different in NTDs. 31612645 2019
Entrez Id: 10395
Gene Symbol: DLC1
DLC1
0.010 Biomarker group BEFREE We identified four novel loss-of-function variants in three genes, MTHFR, DLC1, and ITGB1, previously associated with NTD. 30415495 2019